Indika Rajapakse, PhD
Professor of Computational Medicine and Bioinformatics
Professor of Mathematics
College of Literature, Science, and the Arts
[email protected]

Available to mentor
Indika Rajapakse, PhD
Professor
  • Qualifications
  • Center Memberships
  • Research Overview
  • Links
  • Recent Publications
    • Qualifications
    • Postdoctoral Fellow
      Fred Hutchinson Cancer Research Center, Genome Cell Biology, 2012
    Center Memberships
    • Center Member
      Rogel Cancer Center
    • Center Member
      Biosciences Initiative
    Research Overview

    Biology: Cell Reprogramming and Digital Biology. Mathematics: Data-guided Learning and Control of Higher Order Structures and Mathematics of Synchronization.

    Links
    • Rajapakse Lab
    Recent Publications See All Publications
    • Journal Article
      A programmable platform for probing cell migration and proliferation.
      Cwycyshyn J, Stansbury C, Meixner W, Hoying JB, Muir LA, Rajapakse I. APL Bioeng, 2024 Dec; 8 (4): 046106 DOI:10.1063/5.0209547
      PMID: 39479200
    • Preprint
      Language Model Powered Digital Biology
      Pickard J, Choi MA, Oliven N, Stansbury C, Cwycyshyn J, Galioto N, Gorodetsky A, Velasquez A, Rajapakse I. 2024 Sep 4; arXiv, DOI:10.48550/arxiv.2409.02864
    • Preprint
      Data-guided direct reprogramming of human fibroblasts into the hematopoietic lineage
      Stansbury C, Cwycyshyn J, Pickard J, Meixner W, Rajapakse I, Muir L. 2024 bioRxiv, DOI:10.1101/2024.08.26.609589
    • Preprint
      Biomarker Selection for Adaptive Systems.
      Pickard J, Stansbury C, Surana A, Muir L, Bloch A, Rajapakse I. 2024 Aug 12;
      PMID: 38827457
    • Journal Article
      Geometric Aspects of Observability of Hypergraphs
      Pickard J, Stansbury C, Surana A, Rajapakse I, Bloch A. IFAC-PapersOnLine, 2024 Jun 1; 58 (6): 321 - 326. DOI:10.1016/j.ifacol.2024.08.301
    • Preprint
      Biomarker Selection for Adaptive Systems
      Pickard J, Stansbury C, Surana A, Muir L, Bloch A, Rajapakse I. 2024 May 16; arXiv, DOI:10.48550/arxiv.2405.09809
    • Preprint
      Geometric Aspects of Observability of Hypergraphs
      Pickard J, Stansbury C, Surana A, Rajapakse I, Bloch A. 2024 Apr 11; arXiv, DOI:10.48550/arxiv.2404.07480
    • Journal Article
      Bioinformatics Retrieval Augmentation Data (BRAD) Digital Assistant.
      Pickard J, Choi MA, Oliven N, Stansbury C, Cwycyshyn J, Galioto N, Gorodetsky AA, Velasquez A, Rajapakse I. CoRR, 2024 abs/2409.02864:
    Featured News & Stories AI-generated fantasist illustration with two identical cells in a blueprint style
    Department News
    A new grant for the Rajapakse lab
    The Rajapakse lab receives a new grant from the Defense Advanced Research Projects Agency (DARPA) to develop an AI assisted foundation model for direct cell reprogramming.
    Department News
    2023 Faculty Promotions and Accolades
    2023 Faculty Promotions and Accolades at the U-M Department of Computational Medicine and Bioinformatics (DCMB).
    Department News
    BAB in the Lab
    BAB is a tall, quiet, and infatigable robot. BAB lives at the University of Michigan North Campus Research Complex, in Dr. Indika Rajapakse’s lab.