Available to mentor
The goal of the Heemskerk lab is to understand how human pluripotent stem cells generate and interpret the chemical and physical signals that allow them to self-organize into spatial structures consisting of multiple cell types in vitro, and, by extension to the embryo, in vivo. By combining quantitative live-cell measurements and engineering tools such as micropatterning with predictive mathematical models we can answer currently intractable questions in developmental and stem cell biology.
Heemskerk Lab Google Scholar
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Postdoctoral FellowRice University, United States, 2018
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Postdoctoral FellowUniversity of California, Santa Barbara, Kavli Institute for Theoretical Physics, 2015
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PhD in Theoretical PhysicsUniversity of California, Santa Barbara, 2012
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MS in Theoretical PhysicsUniversiteit van Amsterdam, Amsterdam, 2007
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BSc in Computer ScienceUniversiteit van Amsterdam, Amsterdam, 2007
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BSc in PhysicsUniversiteit van Amsterdam, Amsterdam, 2005
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Center MemberCenter for Computational Medicine and Bioinformatics
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Center MemberBiosciences Initiative
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Center MemberCenter for Cell Plasticity and Organ Design
What are the mechanisms through which stem cells give rise to self-organized embryonic structures and organs? How is the information required to form these structures encoded in highly dynamic signals? What is the role of the physical forces and geometric constraints in reproducible tissue patterning and morphogenesis?
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Teague S, Primavera G, Chen B, Liu Z-Y, Yao L, Freeburne E, Khan H, Jo K, Johnson C, Heemskerk I. Nat Commun, 2024 Feb 17; 15 (1): 1471Journal ArticleTime-integrated BMP signaling determines fate in a stem cell model for early human development.
DOI:10.1038/s41467-024-45719-9 PMID: 38368368 -
Jo K, Liu Z-Y, Patel G, Yu Z, Yao L, Teague S, Johnson C, Spence J, Heemskerk I. bioRxiv, 2024 Jul 11;Journal ArticleEndogenous FGFs drive ERK-dependent cell fate patterning in 2D human gastruloids.
DOI:10.1101/2024.07.08.602611 PMID: 39026750 -
Chen B, Khan H, Yu Z, Yao L, Freeburne E, Jo K, Johnson C, Heemskerk I. 2024 Mar 25;PreprintExtended culture of 2D gastruloids to model human mesoderm development.
DOI:10.1101/2024.03.21.585753 PMID: 38585971 -
Liu Z-Y, Trivedi V, Heemskerk I. Nat Methods, 2023 Dec; 20 (12): 1859 - 1862.Journal ArticleMapping morphogenesis and mechanics in embryo models.
DOI:10.1038/s41592-023-02079-4 PMID: 38057513 -
Teague S, Yao L, Heemskerk I. Curr Opin Cell Biol, 2023 Dec; 85: 102259Journal ArticleThe many dimensions of germline competence.
DOI:10.1016/j.ceb.2023.102259 PMID: 37852152 -
Freeburne E, Teague S, Khan H, Li B, Ding S, Chen B, Helms A, Heemskerk I. Curr Protoc, 2023 Oct; 3 (10): e915Journal ArticleSpatial Single Cell Analysis of Proteins in 2D Human Gastruloids Using Iterative Immunofluorescence.
DOI:10.1002/cpz1.915 PMID: 37882990 -
Teague S, Primavera G, Chen B, Freeburne E, Khan H, Jo K, Johnson C, Heemskerk I. 2023 Apr 10;PreprintThe time integral of BMP signaling determines fate in a stem cell model for early human development.
DOI:10.1101/2023.04.10.536068 PMID: 37090515 -
Hein RFC, Conchola AS, Fine AS, Xiao Z, Frum T, Brastrom LK, Akinwale MA, Childs CJ, Tsai Y-H, Holloway EM, Huang S, Mahoney J, Heemskerk I, Spence JR. Development, 2022 Oct 15; 149 (20):Journal ArticleStable iPSC-derived NKX2-1+ lung bud tip progenitor organoids give rise to airway and alveolar cell types.
DOI:10.1242/dev.200693 PMID: 36039869