Idse Heemskerk, PhD
Assistant Professor of Cell and Developmental Biology
Assistant Professor of Biophysics
Assistant Professor of Physics
College of Literature, Science, and the Arts
[email protected]

Available to mentor

Idse Heemskerk, PhD
Assistant Professor
  • About
  • Links
  • Qualifications
  • Center Memberships
  • Research Overview
  • Recent Publications
  • About

    The goal of the Heemskerk lab is to understand how human pluripotent stem cells generate and interpret the chemical and physical signals that allow them to self-organize into spatial structures consisting of multiple cell types in vitro, and, by extension to the embryo, in vivo. By combining quantitative live-cell measurements and engineering tools such as micropatterning with predictive mathematical models we can answer currently intractable questions in developmental and stem cell biology.

    Links
    • Heemskerk Lab
    • Google Scholar
    Qualifications
    • Postdoctoral Fellow
      Rice University, United States, 2018
    • Postdoctoral Fellow
      University of California, Santa Barbara, Kavli Institute for Theoretical Physics, 2015
    • PhD in Theoretical Physics
      University of California, Santa Barbara, 2012
    • MS in Theoretical Physics
      Universiteit van Amsterdam, Amsterdam, 2007
    • BSc in Computer Science
      Universiteit van Amsterdam, Amsterdam, 2007
    • BSc in Physics
      Universiteit van Amsterdam, Amsterdam, 2005
    Center Memberships
    • Center Member
      Center for Computational Medicine and Bioinformatics
    • Center Member
      Biosciences Initiative
    • Center Member
      Center for Cell Plasticity and Organ Design
    Research Overview

    What are the mechanisms through which stem cells give rise to self-organized embryonic structures and organs? How is the information required to form these structures encoded in highly dynamic signals? What is the role of the physical forces and geometric constraints in reproducible tissue patterning and morphogenesis?

    Recent Publications See All Publications
    • Journal Article
      Time-integrated BMP signaling determines fate in a stem cell model for early human development.
      Teague S, Primavera G, Chen B, Liu Z-Y, Yao L, Freeburne E, Khan H, Jo K, Johnson C, Heemskerk I. Nat Commun, 2024 Feb 17; 15 (1): 1471 DOI:10.1038/s41467-024-45719-9
      PMID: 38368368
    • Journal Article
      Endogenous FGFs drive ERK-dependent cell fate patterning in 2D human gastruloids.
      Jo K, Liu Z-Y, Patel G, Yu Z, Yao L, Teague S, Johnson C, Spence J, Heemskerk I. bioRxiv, 2024 Jul 11; DOI:10.1101/2024.07.08.602611
      PMID: 39026750
    • Preprint
      Extended culture of 2D gastruloids to model human mesoderm development.
      Chen B, Khan H, Yu Z, Yao L, Freeburne E, Jo K, Johnson C, Heemskerk I. 2024 Mar 25; DOI:10.1101/2024.03.21.585753
      PMID: 38585971
    • Journal Article
      Mapping morphogenesis and mechanics in embryo models.
      Liu Z-Y, Trivedi V, Heemskerk I. Nat Methods, 2023 Dec; 20 (12): 1859 - 1862. DOI:10.1038/s41592-023-02079-4
      PMID: 38057513
    • Journal Article
      The many dimensions of germline competence.
      Teague S, Yao L, Heemskerk I. Curr Opin Cell Biol, 2023 Dec; 85: 102259 DOI:10.1016/j.ceb.2023.102259
      PMID: 37852152
    • Journal Article
      Spatial Single Cell Analysis of Proteins in 2D Human Gastruloids Using Iterative Immunofluorescence.
      Freeburne E, Teague S, Khan H, Li B, Ding S, Chen B, Helms A, Heemskerk I. Curr Protoc, 2023 Oct; 3 (10): e915 DOI:10.1002/cpz1.915
      PMID: 37882990
    • Preprint
      The time integral of BMP signaling determines fate in a stem cell model for early human development.
      Teague S, Primavera G, Chen B, Freeburne E, Khan H, Jo K, Johnson C, Heemskerk I. 2023 Apr 10; DOI:10.1101/2023.04.10.536068
      PMID: 37090515
    • Journal Article
      Stable iPSC-derived NKX2-1+ lung bud tip progenitor organoids give rise to airway and alveolar cell types.
      Hein RFC, Conchola AS, Fine AS, Xiao Z, Frum T, Brastrom LK, Akinwale MA, Childs CJ, Tsai Y-H, Holloway EM, Huang S, Mahoney J, Heemskerk I, Spence JR. Development, 2022 Oct 15; 149 (20): DOI:10.1242/dev.200693
      PMID: 36039869
    Featured News & Stories
    Department News
    New Publication from the Heemskerk Lab
    "Mapping morphogenesis and mechanics in embryo models," has been published in Nature Methods.