Godfrey Dorr Stobbe Professor of Bioinformatics
Professor of Pathology
Professor of Computational Medicine and Bioinformatics
[email protected]
Available to mentor
Alexey I Nesvizhskii, PhD
Professor
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Center MemberRogel Cancer Center
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Ferreira HJ, Stevenson BJ, Pak H, Yu F, Almeida Oliveira J, Huber F, Taillandier-Coindard M, Michaux J, Ricart-Altimiras E, Kraemer AI, Kandalaft LE, Speiser DE, Nesvizhskii AI, Müller M, Bassani-Sternberg M. Nat Commun, 2024 Mar 15; 15 (1): 2357Journal ArticleImmunopeptidomics-based identification of naturally presented non-canonical circRNA-derived peptides.
DOI:10.1038/s41467-024-46408-3 PMID: 38490980 -
Desai H, Andrews KH, Bergersen KV, Ofori S, Yu F, Shikwana F, Arbing MA, Boatner LM, Villanueva M, Ung N, Reed EF, Nesvizhskii AI, Backus KM. Nat Commun, 2024 Oct 28; 15 (1): 9284Journal ArticleChemoproteogenomic stratification of the missense variant cysteinome.
DOI:10.1038/s41467-024-53520-x PMID: 39468056 -
Li K, Teo GC, Yang KL, Yu F, Nesvizhskii AI. 2024 Oct 16;PreprintdiaTracer enables spectrum-centric analysis of diaPASEF proteomics data.
DOI:10.1101/2024.05.25.595875 PMID: 38854051 -
Yu F, Deng Y, Nesvizhskii AI. 2024 Oct 15;PreprintMSFragger-DDA+ Enhances Peptide Identification Sensitivity with Full Isolation Window Search.
DOI:10.1101/2024.10.12.618041 PMID: 39463976 -
Kohler D, Staniak M, Yu F, Nesvizhskii AI, Vitek O. Nat Protoc, 2024 Oct; 19 (10): 2915 - 2938.Journal ArticleAn MSstats workflow for detecting differentially abundant proteins in large-scale data-independent acquisition mass spectrometry experiments with FragPipe processing.
DOI:10.1038/s41596-024-01000-3 PMID: 38769142 -
Gonzalez ME, Brophy B, Eido A, Leonetti AE, Djomehri SI, Augimeri G, Carruthers NJ, Cavalcante RG, Giordano F, Andò S, Nesvizhskii AI, Fearon ER, Kleer CG. Cancer Res, 2024 Oct 1; 84 (19): 3235 - 3249.Journal ArticleCCN6 Suppresses Metaplastic Breast Carcinoma by Antagonizing Wnt/β-Catenin Signaling to Inhibit EZH2-Driven EMT.
DOI:10.1158/0008-5472.CAN-23-4054 PMID: 39024552 -
Kwon Y, Woo J, Yu F, Williams SM, Markillie LM, Moore RJ, Nakayasu ES, Chen J, Campbell-Thompson M, Mathews CE, Nesvizhskii AI, Qian W-J, Zhu Y. Mol Cell Proteomics, 2024 Sep 20; 23 (11): 100841Journal ArticleProteome-Scale Tissue Mapping Using Mass Spectrometry Based on Label-Free and Multiplexed Workflows.
DOI:10.1016/j.mcpro.2024.100841 PMID: 39307423 -
Beltrao P, Van Den Bossche T, Gabriels R, Holstein T, Kockmann T, Nameni A, Panse C, Schlapbach R, Lautenbacher L, Mattanovich M, Nesvizhskii A, Van Puyvelde B, Scheid J, Schwämmle V, Strauss M, Susmelj AK, The M, Webel H, Wilhelm M, Winkelhardt D, Wolski WE, Xi M. J Proteomics, 2024 Aug 15; 305: 105246Journal ArticleProceedings of the EuBIC-MS developers meeting 2023.
DOI:10.1016/j.jprot.2024.105246 PMID: 38964537
Department News
Congratulations to Kevin Yang (PhD student in the Nesvizhskii lab) on his first first-author publication in "Nature Communications!"
Department News
Dr. Alexey Nesvizhskii named inaugural Godfrey Dorr Stobbe Professor of Bioinformatics
